Class: SubMethod¶

A method that is part of a composite method

erDiagram
Any {

}
Coding {
    string code  
    string display  
    uri system  
}
Configuration {
    string name  
    string description  
    DataTypeEnum dataType  
    stringList enumValues  
}
InputStatistic {
    string description  
    string role  
}
InputVariable {
    string description  
    DataTypeEnum dataType  
    string inputType  
    string label  
    boolean multivalued  
    boolean required  
    string role  
}
ModelParameter {
    string description  
    string name  
}
ModelTerm {
    string description  
    string name  
}
OutputSpec {

}
Statistic {
    string name  
    string description  
    string conceptId  
    string label  
    string ncitCode  
}
StatisticSet {
    string name  
    string description  
    string conceptId  
    string label  
    string ncitCode  
}
StudyGroupPopulation {
    string description  
    string name  
}
SubMethod {
    string name  
    string description  
    string conceptId  
    string label  
    string methodType  
    string ncitCode  
}

Configuration ||--|o Any : "defaultValue"
Configuration ||--}o SubMethod : "configuredSubMethods"
InputStatistic ||--|| Statistic : "statisticId"
InputStatistic ||--|| SubMethod : "subMethodId"
InputVariable ||--}o Coding : "codings"
ModelParameter ||--|o FactorLevelCombinationSpec : "forFactorLevelCombination"
ModelParameter ||--}o Coding : "codings"
ModelParameter ||--}o FactorLevel : "forFactorLevels"
ModelParameter ||--}o InputVariable : "forInputVariables"
ModelTerm ||--}o Coding : "codings"
ModelTerm ||--}o Input : "forInputs"
ModelTerm ||--}| ModelParameter : "parameters"
OutputSpec ||--|o StudyGroupPopulation : "forStudyGroupPopulation"
OutputSpec ||--}o Coding : "codings"
OutputSpec ||--}o InputVariable : "forInputVariables"
OutputSpec ||--}o ModelParameter : "forModelParameters"
OutputSpec ||--}o ModelTerm : "forModelTerms"
OutputSpec ||--}o Statistic : "statistics"
OutputSpec ||--}o StatisticSet : "statisticSets"
Statistic ||--}o Coding : "codings"
StatisticSet ||--}o Coding : "codings"
StatisticSet ||--}o Statistic : "statistics"
StudyGroupPopulation ||--|| FactorLevelCombinationSpec : "factorLevelCombination"
StudyGroupPopulation ||--}o Coding : "codings"
SubMethod ||--|o OutputSpec : "output"
SubMethod ||--}o Coding : "codings"
SubMethod ||--}o Configuration : "configurations"
SubMethod ||--}o InputStatistic : "inputs"
SubMethod ||--}o SubMethod : "subMethods"

Inheritance¶

Method
- SubMethod

Slots¶

Name	Cardinality and Range	Description	Inheritance
conceptId	1 String	Unique sub-method identifier, e	Method
name	1 String	Human-readable sub-method name	Method
label	0..1 String	Short label for display	Method
description	0..1 String	Free-text explanation of what the sub-method does	Method
ncitCode	0..1 String	NCIt code	Method
codings	* Coding	Mappings to external terminology or ontology codes	Method
methodType	1 String	Indicates whether this is a model-based, aggregation or derivation method	Method
configurations	* Configuration	Configurable parameters for the method	Method
inputs	* InputStatistic	Statistic value(s) produced by other sub-method(s) within the same composite ...	Method
subMethods	* SubMethod	Sub-methods that are part of this method	Method
output	0..1 OutputSpec	Specification of the output of a single method or sub-method	Method

Usages¶

used by	used in	type	used
Method	subMethods	range	SubMethod
SubMethod	subMethods	range	SubMethod
CompositeMethod	subMethods	range	SubMethod
ModelBasedMethod	subMethods	range	SubMethod
AggregationMethod	subMethods	range	SubMethod
DerivationMethod	subMethods	range	SubMethod
Configuration	configuredSubMethods	range	SubMethod
InputStatistic	subMethodId	range	SubMethod

Identifier and Mapping Information¶

Schema Source¶

from schema: https://cdisc.org/ac/method

Mappings¶

Mapping Type	Mapped Value
self	ac:SubMethod
native	ac:SubMethod
exact	obo:OBI_0200000

LinkML Source¶

Direct¶

name: SubMethod
description: A method that is part of a composite method
from_schema: https://cdisc.org/ac/method
exact_mappings:
- obo:OBI_0200000
is_a: Method
slot_usage:
  conceptId:
    name: conceptId
    description: Unique sub-method identifier, e.g., M.ANCOVA, M.Subtraction
    pattern: ^(S)?M\..+$
  name:
    name: name
    description: Human-readable sub-method name.
  description:
    name: description
    description: Free-text explanation of what the sub-method does.
  configurations:
    name: configurations
    comments:
    - Sub-methods do not have their own configurations.
    - All configurations are defined in the top-level method, where `configuredSubMethods`
      is used to specify the sub-method(s) affected by the configuration.
    value_presence: ABSENT
  inputs:
    name: inputs
    description: Statistic value(s) produced by other sub-method(s) within the same
      composite method used for roles defined in the formula for the sub-method.
    range: InputStatistic

Induced¶

name: SubMethod
description: A method that is part of a composite method
from_schema: https://cdisc.org/ac/method
exact_mappings:
- obo:OBI_0200000
is_a: Method
slot_usage:
  conceptId:
    name: conceptId
    description: Unique sub-method identifier, e.g., M.ANCOVA, M.Subtraction
    pattern: ^(S)?M\..+$
  name:
    name: name
    description: Human-readable sub-method name.
  description:
    name: description
    description: Free-text explanation of what the sub-method does.
  configurations:
    name: configurations
    comments:
    - Sub-methods do not have their own configurations.
    - All configurations are defined in the top-level method, where `configuredSubMethods`
      is used to specify the sub-method(s) affected by the configuration.
    value_presence: ABSENT
  inputs:
    name: inputs
    description: Statistic value(s) produced by other sub-method(s) within the same
      composite method used for roles defined in the formula for the sub-method.
    range: InputStatistic
attributes:
  conceptId:
    name: conceptId
    description: Unique sub-method identifier, e.g., M.ANCOVA, M.Subtraction
    from_schema: https://cdisc.org/ac/method
    rank: 1000
    identifier: true
    owner: SubMethod
    domain_of:
    - Method
    - Statistic
    - StatisticSet
    range: string
    required: true
    pattern: ^(S)?M\..+$
  name:
    name: name
    description: Human-readable sub-method name.
    from_schema: https://cdisc.org/ac/method
    rank: 1000
    owner: SubMethod
    domain_of:
    - NameAsIdentifier
    - Method
    - Statistic
    - StatisticSet
    range: string
    required: true
  label:
    name: label
    description: Short label for display
    from_schema: https://cdisc.org/ac/method
    rank: 1000
    owner: SubMethod
    domain_of:
    - Method
    - Input
    - Statistic
    - StatisticSet
    range: string
  description:
    name: description
    description: Free-text explanation of what the sub-method does.
    from_schema: https://cdisc.org/ac/method
    rank: 1000
    owner: SubMethod
    domain_of:
    - Method
    - Configuration
    - StatisticalModelSpec
    - ModelTerm
    - ModelParameter
    - Input
    - FactorLevel
    - FactorLevelCombinationSpec
    - StudyGroupPopulation
    - InputStatistic
    - Statistic
    - StatisticSet
    range: string
  ncitCode:
    name: ncitCode
    description: NCIt code
    from_schema: https://cdisc.org/ac/method
    rank: 1000
    owner: SubMethod
    domain_of:
    - Method
    - Statistic
    - StatisticSet
    range: string
    pattern: ^(C[0-9]+(_NEW)?)$
    implicit_prefix: NCIT
  codings:
    name: codings
    description: Mappings to external terminology or ontology codes
    from_schema: https://cdisc.org/ac/method
    rank: 1000
    owner: SubMethod
    domain_of:
    - Method
    - StatisticalModelSpec
    - ModelTerm
    - ModelParameter
    - Input
    - FactorLevel
    - FactorLevelCombinationSpec
    - StudyGroupPopulation
    - OutputSpec
    - Statistic
    - StatisticSet
    range: Coding
    multivalued: true
    inlined: true
    inlined_as_list: true
  methodType:
    name: methodType
    description: Indicates whether this is a model-based, aggregation or derivation
      method
    comments:
    - The value of methodType must match the name of one of the sub-classes of Method
      (i.e., CompositeMethod, ModelBasedMethod, AggregationMethod, DerivationMethod).
    from_schema: https://cdisc.org/ac/method
    rank: 1000
    designates_type: true
    owner: SubMethod
    domain_of:
    - Method
    range: string
    required: true
  configurations:
    name: configurations
    description: Configurable parameters for the method.
    comments:
    - Sub-methods do not have their own configurations.
    - All configurations are defined in the top-level method, where `configuredSubMethods`
      is used to specify the sub-method(s) affected by the configuration.
    from_schema: https://cdisc.org/ac/method
    rank: 1000
    owner: SubMethod
    domain_of:
    - Method
    range: Configuration
    multivalued: true
    inlined: true
    inlined_as_list: true
    value_presence: ABSENT
  inputs:
    name: inputs
    description: Statistic value(s) produced by other sub-method(s) within the same
      composite method used for roles defined in the formula for the sub-method.
    from_schema: https://cdisc.org/ac/method
    exact_mappings:
    - obo:OBI_0000293
    rank: 1000
    owner: SubMethod
    domain_of:
    - Method
    range: InputStatistic
    multivalued: true
    inlined: true
    inlined_as_list: true
  subMethods:
    name: subMethods
    description: Sub-methods that are part of this method.
    from_schema: https://cdisc.org/ac/method
    exact_mappings:
    - obo:BFO_0000051
    rank: 1000
    owner: SubMethod
    domain_of:
    - Method
    - CompositeMethod
    range: SubMethod
    multivalued: true
    inlined: true
    inlined_as_list: true
  output:
    name: output
    description: Specification of the output of a single method or sub-method.
    comments:
    - The output of a method or sub-method is a set of one or more statistics that
      are related to a component of the method.
    from_schema: https://cdisc.org/ac/method
    exact_mappings:
    - obo:OBI_0000299
    rank: 1000
    owner: SubMethod
    domain_of:
    - Method
    range: OutputSpec
    inlined: true
    inlined_as_list: true

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